1 ExSan++ High Perfomance C++ Computing _V22_17.1.6@04.21.python
3 Mon May 2 08:38:03 2022
4
5
6 exsan.plusplus@gmail.com https://twitter.com/#!/ExSan_com
7 JOB: basic_dna3803
8
9 Data File: c:\exsan\exsan_data\DNA_FA_0001.txt
10
11a 1st_line TAAACAAGCAGTAGTAATTCCTGCTTTATCAAGATAATTTTTCGACTCATCAGA
11b 1st_line AAATATCCGAAAGTGTTAACTTCTGCGTCATGGAAGCGATAAAACTC
12
13 size strand 100
14
15 total strands 1000
16
17a last_line B@DFEFFFGEGGGFGHHHGGFGFGFIHGEGEHGHHGHGGEHBHF@HCIHEHEGHGGGCFGGBH
17b last_line HIHHGHFHHFGDJJDGIFHGKHGGFG>GHDFIFGEED
18
19 strand size 100
20
21 Generate Exsan ( 10 , 10 )
22
23 Basis
24 WORKSHEET 1 A[10, 10] CHAR
25 A B C D E F G H I J
26 >------------------------------<
27 1:T A A A C A A G C A
28 2:G T A G T A A T T C
29 3:C T G C T T T A T C
30 4:A A G A T A A T T T
31 5:T T C G A C T C A T
32 6:C A G A A A T A T C
33 7:C G A A A G T G T T
34 8:A A C T T C T G C G
35 9:T C A T G G A A G C
36 10:G A T A A A A C T C
37 <------------------------------>
38
39 WORKSHEET 2 B[10, 10] CHAR
40 A B C D E F G H I J
41 >------------------------------<
42 1:A A C A A G C A G T
43 2:A G T A A T T C C T
44 3:G C T T T A T C A A
45 4:G A T A A T T T T T
46 5:C G A C T C A T C A
47 6:G A A A T A T A C G
48 7:A A A G T G T T A A
49 8:C T T C T G C G T C
50 9:A T G G A C A C G A
51 10:A A A A A C T C C C
52 <------------------------------>
53
54 WORKSHEET 999[10, 10]
55 A B C D E F G H I J
56 >------------------------------<
57 1:G C G G C G C A A C
58 2:C T G T G A C G A C
59 3:A A A T C T G C T C
60 4:A A A T T T A T G C
61 5:G C G C T T C G A T
62 6:A A A A A T G A T T
63 7:G G C G T A T C C A
64 8:A C C T G C A G A G
65 9:T T T T A T C G C T
66 10:T C C A T G A C G C
67 <------------------------------>
68
69 WORKSHEET 1000[10, 10]
70 A B C D E F G H I J
71 >------------------------------<
72 1:C G A G C T G C G C
73 2:A A G G A T A G G T
74 3:C G A A T T T T C T
75 4:C A T T T T C C G C
76 5:C A G C A G T C C A
77 6:C T T C G A T T T A
78 7:A T T C G T A A A C
79 8:A A G C A G T A G T
80 9:A A T T C C T G C T
81 10:T T A T C A A G A T
82 <------------------------------>
83
84 Qualities
85 WORKSHEET 1 A[10, 10] PIX
86 A B C D E F G H I J
87 >------------------------------<
88 1: 33 31 35 37 36 37 37 37 38 36
89 2: 38 38 38 39 36 39 38 39 38 39
90 3: 38 38 38 38 39 40 37 38 37 40
91 4: 37 39 40 34 37 38 39 38 39 38
92 5: 41 38 39 37 38 39 38 40 39 36
93 6: 39 38 38 39 41 38 37 36 37 39
94 7: 38 39 36 38 38 39 39 38 39 40
95 8: 37 38 37 38 35 40 37 38 38 37
96 9: 38 38 38 37 39 38 38 38 39 38
97 10: 38 38 32 38 40 37 38 38 34 38
98 <------------------------------>
99
100 WORKSHEET 2 B[10, 10] PIX
101 A B C D E F G H I J
102 >------------------------------<
103 1: 28 31 31 34 36 33 37 31 33 38
104 2: 33 38 21 38 37 16 36 27 15 19
105 3: 34 18 36 22 36 13 24 38 28 39
106 4: 27 39 25 39 39 26 39 33 39 26
107 5: 38 21 24 37 22 11 22 35 38 7
108 6: 7 36 38 23 32 23 11 12 20 12
109 7: 23 11 30 11 11 11 32 36 29 34
110 8: 11 33 30 11 11 11 21 19 3 32
111 9: 34 6 10 6 28 6 10 19 6 18
112 10: 9 19 10 36 18 17 17 9 6 7
113 <------------------------------>
114
115 WORKSHEET 999[10, 10]
116 A B C D E F G H I J
117 >------------------------------<
118 1: 14 31 35 34 31 33 37 35 38 33
119 2: 38 31 38 21 36 29 32 33 38 39
120 3: 38 37 37 38 35 40 38 38 37 37
121 4: 36 39 37 35 39 38 11 37 33 36
122 5: 38 34 36 35 31 39 38 37 39 36
123 6: 32 36 35 39 38 38 22 33 37 32
124 7: 23 22 30 38 22 30 37 36 35 37
125 8: 39 29 35 38 21 40 33 38 38 37
126 9: 19 34 38 29 34 38 38 36 35 35
127 10: 38 38 38 17 18 24 30 34 26 31
128 <------------------------------>
129
130 WORKSHEET 1000[10, 10]
131 A B C D E F G H I J
132 >------------------------------<
133 1: 33 31 35 37 36 37 37 37 38 36
134 2: 38 38 38 37 38 39 39 39 38 38
135 3: 37 38 37 38 37 40 39 38 36 38
136 4: 36 39 38 39 39 38 39 38 38 36
137 5: 39 33 39 37 31 39 34 40 39 36
138 6: 39 36 38 39 38 38 38 34 37 38
139 7: 38 33 39 39 40 39 39 38 39 37
140 8: 39 39 37 38 35 41 41 35 38 40
141 9: 37 39 38 42 39 38 38 37 38 29
142 10: 38 39 35 37 40 37 38 36 36 35
143 <------------------------------>
144
145 Total counter = 100000
146a n_A = 28426 n_C = 21890 n_G = 19147
146b n_T = 30531 n_N = 6 total: 100000 ***n_GC = 41037
147
148 % A: 28.43 C: 21.89 G: 19.15 T: 30.53 N: 0.006
149
150 check-sum-> 1
151
152 Qualities min = 0 max = 43 range: 43
153
154 delta_Q: 43
155
156 Histogram of Qualities( 0 <--> 43 ):
157
158 0.046 % 0 - 4 :
159
160 0.552 % 4 - 8 :
161
162 1.472 % 8 - 12 : *
163
164 1.487 % 12 - 17 : *
165
166 1.861 % 17 - 21 : *
167
168 2.231 % 21 - 25 : **
169
170 9.051 % 25 - 30 : *********
171
172 63.4 % 30 - 34 : ***************************************************************
173
174 19.83 % 34 - 38 : *******************
175
176 0.07 % 38 - 43 :
177
178 Search this Random String length: 11 ---> AGCCTCATGGG
179
180 Search this Random String length: 11 ---> TACTGACAAAA
181
182 Search this Random String length: 9 ---> CAGCGTTGG
183
184 Search this Random String length: 8 ---> GGCTCGCA
185
186 Search this Random String length: 10 ---> AAATGCCTCA
187
188 Search this Random String length: 8 ---> AAACAATT
189
190 Search this Random String length: 9 ---> CGCTAACAA
191
192 Search this Random String length: 9 ---> AAACACCTG
193
194 Search this Random String length: 12 ---> GGATGTGCTATT
195
196 Search this Random String length: 8 ---> ATTGGTGG
197
198 Search this Random String length: 9 ---> GCTACAGCG
199
200 Search this Random String length: 12 ---> AGTCATACGAAG
201
202 Search this Random String length: 9 ---> AGATTCAAT
203
204 Search this Random String length: 9 ---> ACGGTTTAG
205
206 Search this Random String length: 10 ---> TGGAAAGACA
207
208 Search this Random String length: 10 ---> ATAGTAACTG
209
210 Search this Random String length: 8 ---> TACAATGA
211
212 Search this Random String length: 9 ---> TGGCACGAT
213
214 Search this Random String length: 11 ---> AATACCCGAGG
215
216 Search this Random String length: 10 ---> ATGTACGCAT
217
218 Search this Random String length: 12 ---> ATGTAGTTAGTA
219
220 Search this Random String length: 11 ---> TCGAAAGTAGC
221
222 Search this Random String length: 11 ---> TATCCGCGAGG
223
224 Search this Random String length: 12 ---> TATCACCTCAAT
225
226 Search this Random String length: 9 ---> GTAGGTTCA
227
228 Search this Random String length: 10 ---> TAGTTAAACT
229
230 Search this Random String length: 12 ---> CAACCCGGTTTT
231
232 Search this Random String length: 8 ---> GACACATC
233
234 Search this Random String length: 10 ---> TGGTTACCGG
235
236 Search this Random String length: 10 ---> TCATCAGCTA
237
238 Search this Random String length: 11 ---> GGAGTGGGTGC
239
240 Search this Random String length: 12 ---> CTATCTTTTCGT
241
242 Search this Random String length: 9 ---> GGTGCTGCC
243
244 Search this Random String length: 10 ---> CTTTTCAGCC
245
246 Search this Random String length: 11 ---> GCACCCCCCAG
247
248 Search this Random String length: 8 ---> CTTTCCCC
249
250 Search this Random String length: 9 ---> CGGGGAGTT
251
252 Search this Random String length: 9 ---> AGGACTGAT
253
254 Search this Random String length: 10 ---> ACAAACACGA
255
256 Search this Random String length: 12 ---> GAGGGCGTCCTT
257
258 Search this Random String length: 12 ---> GGAGGTAAGGTT
259
260 Search this Random String length: 11 ---> GTTGTTGGCCC
261
262 Search this Random String length: 8 ---> GCTTACAT
263
264 Search this Random String length: 12 ---> GCGGGTTCGGAT
265
266 Search this Random String length: 12 ---> TTGGCGCTCACA
267
268 Search this Random String length: 10 ---> CCTAACGTGT
269
270 Search this Random String length: 8 ---> ACACATTA
271
272 Search this Random String length: 9 ---> TACACGCGT
273
274 Search this Random String length: 11 ---> AGTATCTGGAG
275
276 Search this Random String length: 8 ---> GTACAAAG
277
278 Search this Random String length: 11 ---> TTGCGTGAAGA
279
280 Search this Random String length: 11 ---> AAGTCGAGGAA
281
282 Search this Random String length: 12 ---> CTCGATCCGGGA
283
284 Search this Random String length: 11 ---> CAACAGTAGTT
285
286 Search this Random String length: 8 ---> TTAACCAC
287
288 Search this Random String length: 11 ---> ATCACGGCGCG
289
290 Search this Random String length: 9 ---> TGTTACTAA
291
292 Search this Random String length: 10 ---> TGCGGCCGAT
293
294 Search this Random String length: 10 ---> TACACATTGG
295
296 Search this Random String length: 9 ---> TCCATTGGT
297
298 Search this Random String length: 10 ---> GTGAGCTTTA
299
300 Search this Random String length: 10 ---> GCGATAGAAT
301
302 Search this Random String length: 12 ---> ATAGCCTGTAAC
303
304 Search this Random String length: 8 ---> CTCCTCTA
305
306 Search this Random String length: 11 ---> AAGCGTTCGAT
307
308 Search this Random String length: 10 ---> AACTGTAAGC
309
310 Search this Random String length: 8 ---> GGGGCGTG
311
312 Search this Random String length: 9 ---> CCATTGGTA
313
314 Search this Random String length: 9 ---> TTTCCTTAG
315
316 Search this Random String length: 12 ---> CCCATAGAGACT
317
318 Search this Random String length: 11 ---> CCACGTCTCTC
319
320 Search this Random String length: 10 ---> TCTTTCCCCA
321
322 Search this Random String length: 8 ---> TTTCTACT
323
324 Search this Random String length: 12 ---> TAAGGTGGCATT
325
326 Search this Random String length: 12 ---> AGGGATAAGTTG
327
328 Search this Random String length: 9 ---> CTGCGTCCG
329
330 Search this Random String length: 10 ---> GGAATCGTTA
331
332 Search this Random String length: 10 ---> CTAGATGATC
333
334 Search this Random String length: 9 ---> TGTTCCGCC
335
336 Search this Random String length: 9 ---> TTCAGACTA
337
338 Search this Random String length: 10 ---> TTGGGCCGCC
339
340 Search this Random String length: 11 ---> GAAGTTCGAGA
341
342 Search this Random String length: 12 ---> GTTGTGCGTCCT
343
344 Search this Random String length: 12 ---> GTAGAGCGCCGC
345
346 Search this Random String length: 10 ---> TCTCACTACT
347
348 Search this Random String length: 8 ---> AGACACCC
349
350 Search this Random String length: 8 ---> CTATTTTT
351
352 Search this Random String length: 11 ---> CGCTGTTCAGG
353
354 Search this Random String length: 11 ---> ATCTGCTCCAG
355
356 Search this Random String length: 12 ---> GTGGCTCGTGCG
357
358 Search this Random String length: 8 ---> CGCATCAC
359
360 Search this Random String length: 11 ---> GGGAGCCGAGC
361
362 Search this Random String length: 12 ---> CTGACTGCACCG
363
364 Search this Random String length: 11 ---> ATTCTGTCGCC
365
366 Search this Random String length: 10 ---> CACACGCGTG
367
368 Search this Random String length: 12 ---> CAAGGCTATGTT
369
370 Search this Random String length: 9 ---> CGTCATCTG
371
372 Search this Random String length: 12 ---> AGGTTCCCACGA
373
374 Search this Random String length: 8 ---> ATTAACTA
375
376 Search this Random String length: 11 ---> ATAGCACACGG
377
378 Search this Random String length: 12 ---> GAAACAGTCAGG
379
380 Search this Random String length: 11 ---> GGAACTCAAAC
381
382 Search this Random String length: 9 ---> CCTGCATCT
383
384 Search this Random String length: 9 ---> ATTCATAGC
385
386 Search this Random String length: 9 ---> GTGTAGTTG
387
388 Search this Random String length: 10 ---> ACTTAATTGT
389
390 Search this Random String length: 12 ---> GACTCTCTGGAC
391
392 Search this Random String length: 9 ---> TCCTAAGTG
393
394 Search this Random String length: 12 ---> GGCTCTGCATCG
395
396 Search this Random String length: 10 ---> AGTCCTTTGT
397
398 Search this Random String length: 12 ---> CATCTAGTAGTG
399
400 Search this Random String length: 12 ---> TAGAGATTCCTT
401
402 Search this Random String length: 10 ---> ACTGCCTGTG
403
404 Search this Random String length: 9 ---> TGTAGGGGG
405
406 Search this Random String length: 11 ---> GACTAGCTGCA
407
408 Search this Random String length: 9 ---> GACAGGACG
409
410 Search this Random String length: 10 ---> GGTGGCTCTA
411
412 Search this Random String length: 10 ---> TTCTTGTATC
413
414 Search this Random String length: 12 ---> GACCAACCACTT
415
416 Search this Random String length: 12 ---> CTTTTACTCGTA
417
418 Search this Random String length: 10 ---> ACGGTTAGAT
419
420 Search this Random String length: 9 ---> AACCCAATC
421
422 Search this Random String length: 11 ---> ATCAAGGAGGT
423
424 Search this Random String length: 9 ---> AATTATCAC
425
426 Search this Random String length: 8 ---> TAGCAGGC
427
428 Search this Random String length: 8 ---> ACCTACGA
429
430 Search this Random String length: 8 ---> CCCCATAG
431
432 Search this Random String length: 9 ---> GATAGCTAT
433
434 Search this Random String length: 10 ---> GGCTGGTACC
435
436 Search this Random String length: 10 ---> TCCTACAGCA
437
438 Search this Random String length: 8 ---> GTCTGATG
439
440 Search this Random String length: 9 ---> GGTAAGCCT
441
442 Search this Random String length: 8 ---> GGTGACCC
443
444 Search this Random String length: 11 ---> GATGCTCCGGT
445
446 Search this Random String length: 12 ---> TACTATTTGCCT
447
448 Search this Random String length: 12 ---> CTTCATCGCGTG
449
450 Search this Random String length: 11 ---> GAGTTCCCTAG
451
452 Search this Random String length: 10 ---> GTGGTCGCTC
453
454 Search this Random String length: 10 ---> CCTTTATACT
455
456 Search this Random String length: 11 ---> AATCAGTTCCA
457
458 Search this Random String length: 10 ---> CAATTACACA
459
460 Search this Random String length: 10 ---> TATTTCCCGA
461
462 Search this Random String length: 11 ---> CCCCCCGCAGT
463
464 Search this Random String length: 9 ---> CGAACCTTC
465
466 Search this Random String length: 8 ---> TAAAGGTT
467
468 Search this Random String length: 10 ---> GTACCAGTTG
469
470 Search this Random String length: 12 ---> AATAATGGCGAA
471
472 Search this Random String length: 8 ---> GCTTGACA
473
474 Search this Random String length: 8 ---> TCGGTACC
475
476 Search this Random String length: 11 ---> CAATTATTCGA
477
478 Search this Random String length: 8 ---> TCGACTGA
479
480 Search this Random String length: 11 ---> TCCAGAAGCGC
481
482 Search this Random String length: 9 ---> ATATATTGA
483
484 Search this Random String length: 10 ---> TTATGTGTGC
485
486 Search this Random String length: 8 ---> TGAACAAG
487
488a THERE IS A forward MATCH in page 3 string -> TGAACAAG starts in
488b ( 10 , 9 ) ends in page 4 ( 1 , 6 )
489
490 WORKSHEET 4 D[10, 10] CHAR
491 A B C D E F G H I J
492 >------------------------------<
493 1:A A C A A G C A G T
494 2:A G T A A T T C C T
495 3:G C T T T A T C A A
496 4:G A T A A T T T T T
497 5:C G A C T C A T C A
498 6:G A A A T A T C C G
499 7:A A A G T G T T A A
500 8:C T T C T G C G T C
501 9:A T G G A A G C G A
502 10:T A A A A C T C T G
503 <------------------------------>
504
505 WORKSHEET 5 E[10, 10] CHAR
506 A B C D E F G H I J
507 >------------------------------<
508 1:A G C C G A C G T T
509 2:T T G G C G G C G C
510 3:A A C C T G T G A C
511 4:G A C A A A T C T G
512 5:C T C A A A T T T A
513 6:T G C G C G C T T C
514 7:G A T A A A A A T G
515 8:A T T G G C G T A T
516 9:C C A A C C T G C A
517 10:G A G T T T T A T C
518 <------------------------------>
519
520 Sequencing by Synthesis
521 DNA Polymerase
522a In human genetics polyploidy actually refers to an abnormal state when a
522b has 3 sets of chromosomes (69) or 4 sets (92). Normal cells that have 46 chromosomes,
523
524 ENDS basic_dna3803 Elapsed Time: 1.668 sec
525 NOT VALID FOR DISTRIBUTION ---BE---careful
526 Boost version: 1.59.0
527
528 EXIT FROM EXSAN
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